A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2722739



Internal ID9957039
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:215912319..215912562hg38UCSC Ensembl
Outerchr1:216085661..216085904hg19UCSC Ensembl
Cytoband1q41
Allele length
AssemblyAllele length
hg38244
hg19244
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6704003, essv6675366, essv6669220, essv6825151, essv6889152
SamplesSSM040, SSM031, SSM032, SSM097, SSM080
Known GenesUSH2A
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2722739
Frequency
Sample Size96
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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