A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2722460



Internal ID9956759
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr20:46576682..46577393hg38UCSC Ensembl
Outerchr20:45205321..45206032hg19UCSC Ensembl
Cytoband20q13.12
Allele length
AssemblyAllele length
hg38712
hg19712
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6685819, essv6721594, essv6888696, essv6868262, essv6816218, essv6810059, essv6852656, essv6946462, essv6807050, essv6797004, essv6858595, essv6839530, essv6776569, essv6835752, essv6932855, essv6828608, essv6780391, essv6666256, essv6950050, essv6941324, essv6729200, essv6913550, essv6937168, essv6928709, essv6674625, essv6946017, essv6905748, essv6921186, essv6668657, essv6710263, essv6832176
SamplesSSM022, SSM013, SSM082, SSM086, SSM089, SSM031, SSM020, SSM071, SSM024, SSM067, SSM083, SSM041, SSM077, SSM017, SSM066, SSM029, SSM003, SSM030, SSM021, SSM034, SSM087, SSM046, SSM019, SSM096, SSM023, SSM044, SSM074, SSM075, SSM015, SSM081, SSM080
Known GenesSLC13A3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2722460
Frequency
Sample Size96
Observed Gain0
Observed Loss31
Observed Complex0
Frequencyn/a


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