Variant Details

Variant: esv2722305

Internal ID

9956604

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr20:23702183..23846593	hg38	UCSC Ensembl
Outer	chr20:23682820..23827230	hg19	UCSC Ensembl

Cytoband

20p11.21

Allele length

Assembly	Allele length
hg38	144411
hg19	144411

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv654e201

Supporting Variants

essv6744620, essv6693166, essv6840808, essv6950033, essv6871370, essv6807037, essv6772991, essv6871369, essv6835734, essv6971778, essv6937149, essv6772988, essv6916964, essv6703414, essv6733038, essv6967256, essv6905729, essv6941305, essv6946274, essv6810048, essv6874315, essv6717712, essv6840797, essv6868241, essv6828590, essv6820715, essv6780132, essv6950032, essv6824523, essv6846611, essv6835733, essv6692355, essv6954207, essv6925208, essv6735745, essv6946263, essv6880122, essv6925205, essv6839517, essv6928689, essv6813166, essv6950031, essv6703412, essv6909698, essv6807038, essv6772987, essv6784519, essv6954210, essv6713811, essv6792806, essv6696531, essv6925206, essv6685808, essv6812852, essv6816205, essv6773264, essv6820717, essv6914029, essv6882959, essv6744623, essv6710245, essv6835730, essv6880121, essv6905727, essv6858567, essv6843385, essv6763917, essv6807036, essv6954208, essv6788697, essv6674597, essv6741799, essv6769180, essv6914041, essv6898271, essv6839516, essv6945995, essv6928685, essv6703413, essv6776548, essv6725398, essv6772989, essv6960794, essv6780364, essv6902116, essv6721571, essv6868243, essv6682423, essv6885663, essv6713808, essv6895445, essv6784523, essv6820716, essv6824524, essv6852629, essv6745142, essv6902115, essv6901289, essv6937150, essv6788694, essv6913529, essv6824526, essv6954212, essv6810046, essv6750292, essv6692357, essv6941308, essv6674601, essv6801190, essv6693155, essv6945993, essv6780110, essv6796979, essv6721570, essv6810047, essv6928687, essv6954211, essv6880123, essv6905728, essv6678730, essv6898272, essv6706914, essv6788698, essv6788695, essv6873520, essv6780155, essv6946296, essv6674602, essv6852626, essv6898270, essv6745154, essv6721569, essv6801192, essv6796983, essv6744624, essv6710242, essv6721567, essv6796981, essv6901287, essv6835731, essv6776550, essv6891993, essv6693132, essv6696534, essv6776547, essv6747460, essv6945992, essv6928686, essv6758800, essv6960796, essv6945997, essv6846607, essv6801189, essv6666231, essv6828589, essv6863444, essv6738511, essv6843383, essv6713807, essv6937148, essv6846609, essv6898269, essv6954209, essv6832164, essv6863446, essv6784520, essv6725396, essv6843384, essv6913526, essv6824525, essv6729181, essv6921165, essv6832165, essv6946251, essv6769181, essv6706915, essv6692356, essv6971781, essv6921167, essv6713810, essv6741800, essv6913527, essv6780366, essv6710241, essv6780363, essv6816203, essv6780121, essv6773153, essv6753203, essv6744622, essv6766261, essv6717711, essv6916965, essv6839515, essv6693143, essv6813188, essv6769179, essv6685806, essv6735744, essv6699333, essv6713812, essv6873531, essv6753204, essv6852625, essv6750293, essv6733039, essv6729182, essv6678732, essv6843386, essv6665688, essv6921164, essv6674600, essv6750291, essv6873542, essv6874317, essv6852627, essv6971779, essv6812853, essv6832168, essv6725400, essv6905731, essv6902114, essv6813177, essv6710244, essv6804140, essv6766262, essv6882960, essv6780143, essv6941306, essv6706918, essv6967257, essv6916967, essv6788696, essv6960797, essv6685807, essv6971777, essv6758801, essv6946285, essv6804139, essv6665677, essv6780362, essv6796980, essv6846608, essv6706917, essv6874316, essv6721568, essv6784522, essv6816204, essv6863445, essv6820718, essv6692353, essv6916966, essv6756217, essv6750295, essv6776549, essv6763916, essv6729183, essv6868244, essv6901286, essv6772990, essv6801191, essv6745131, essv6796982, essv6913528, essv6932843, essv6832167, essv6696533, essv6678731, essv6747459, essv6666229, essv6852628, essv6928688, essv6895446, essv6840821, essv6812851, essv6688987, essv6945994, essv6967258, essv6885665, essv6735746, essv6921166, essv6745165, essv6674603, essv6716231, essv6792807, essv6682424, essv6937147, essv6950034, essv6750294, essv6693121, essv6932842, essv6914018

Samples

SSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM050, SSM074, SSM042, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM028, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM029, SSM062, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM056, SSM063, SSM012

Known Genes

CST1, CST2

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2722305

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	92
Observed Complex	0
Frequency	n/a