A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2721353



Internal ID9955649
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:199447704..199447961hg38UCSC Ensembl
Outerchr2:200312427..200312684hg19UCSC Ensembl
Cytoband2q33.1
Allele length
AssemblyAllele length
hg38258
hg19258
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6906574, essv6669694, essv6859724, essv6847865, essv6847727, essv6785470, essv6817116, essv6962271, essv6880741
SamplesSSM027, SSM086, SSM078, SSM088, SSM031, SSM094, SSM011, SSM069, SSM014
Known GenesSATB2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2721353
Frequency
Sample Size96
Observed Gain0
Observed Loss9
Observed Complex0
Frequencyn/a


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