A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2721191



Internal ID10304827
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:178436314..178443253hg38UCSC Ensembl
Outerchr2:179301041..179307980hg19UCSC Ensembl
Cytoband2q31.2
Allele length
AssemblyAllele length
hg386940
hg196940
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6797914, essv6844236, essv6675620, essv6672343, essv6710994, essv6810639, essv6883563, essv6707647, essv6813530, essv6707646, essv6764448, essv6675619, essv6826931, essv6962242, essv6762096, essv6859703, essv6942288, essv6953662, essv6898949, essv6683193, essv6917877, essv6942289, essv6922189, essv6807714, essv6859700, essv6825444
SamplesSSM100, SSM027, SSM075, SSM042, SSM088, SSM002, SSM041, SSM023, SSM018, SSM062, SSM017, SSM032, SSM085, SSM072, SSM005, SSM080, SSM077, SSM076, SSM095, SSM034, SSM004, SSM063
Known GenesMIR548N, PRKRA
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2721191
Frequency
Sample Size96
Observed Gain0
Observed Loss22
Observed Complex0
Frequencyn/a


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