A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2721079



Internal ID9955375
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:166116452..166116784hg38UCSC Ensembl
Outerchr2:166972962..166973294hg19UCSC Ensembl
Cytoband2q24.3
Allele length
AssemblyAllele length
hg38333
hg19333
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6700068, essv6669646, essv6973119
SamplesSSM039, SSM029, SSM031
Known GenesSCN1A
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2721079
Frequency
Sample Size96
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer