A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2720494



Internal ID9954790
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:107400135..107402865hg38UCSC Ensembl
Outerchr2:108016591..108019321hg19UCSC Ensembl
Cytoband2q12.3
Allele length
AssemblyAllele length
hg382731
hg192731
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6739129, essv6726197, essv6797834, essv6679529, essv6896096, essv6829328, essv6919829, essv6787588, essv6871992, essv6925999, essv6804690, essv6910423, essv6793679, essv6877918, essv6753779, essv6825363, essv6938049, essv6922114, essv6801888, essv6689597, essv6902861, essv6748051, essv6879876, essv6859596, essv6822598, essv6683131, essv6880677, essv6832913, essv6704170, essv6750878, essv6669539, essv6807646
SamplesSSM036, SSM071, SSM075, SSM046, SSM013, SSM009, SSM073, SSM093, SSM074, SSM088, SSM002, SSM057, SSM058, SSM018, SSM019, SSM094, SSM003, SSM031, SSM033, SSM081, SSM040, SSM072, SSM082, SSM015, SSM080, SSM022, SSM091, SSM034, SSM099, SSM052, SSM056, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2720494
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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