Variant Details

Variant: esv2719072

Internal ID

9953364

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr19:57496979..57511352	hg38	UCSC Ensembl
Outer	chr19:58008347..58022720	hg19	UCSC Ensembl

Cytoband

19q13.43

Allele length

Assembly	Allele length
hg38	14374
hg19	14374

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6678938, essv6941513, essv6913753, essv6895641, essv6858867, essv6735859, essv6895640, essv6877508, essv6948329, essv6842353, essv6801398, essv6972014, essv6852891, essv6703616, essv6901442, essv6703615, essv6937415, essv6801397, essv6863705, essv6950276, essv6761716, essv6921466, essv6674901, essv6933050, essv6820962, essv6782521, essv6928865, essv6746843, essv6668778, essv6902313, essv6758916, essv6733264, essv6741966, essv6954444, essv6696774, essv6714010, essv6666586, essv6682624, essv6773204, essv6717928, essv6961120, essv6828793, essv6780593, essv6746832, essv6832359, essv6689105, essv6967587, essv6721766, essv6776726, essv6784723, essv6835948, essv6797201, essv6888838, essv6725588

Samples

SSM010, SSM065, SSM022, SSM007, SSM027, SSM092, SSM082, SSM086, SSM033, SSM061, SSM042, SSM078, SSM043, SSM088, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM032, SSM039, SSM024, SSM045, SSM067, SSM012, SSM100, SSM017, SSM066, SSM028, SSM029, SSM003, SSM030, SSM047, SSM021, SSM037, SSM087, SSM019, SSM096, SSM052, SSM068, SSM044, SSM015, SSM026, SSM049, SSM008, SSM098, SSM059, SSM081, SSM080

Known Genes

ZNF773

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2719072

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	50
Observed Complex	0
Frequency	n/a