Variant Details

Variant: esv2719071

Internal ID

9953363

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr19:57490792..57506491	hg38	UCSC Ensembl
Outer	chr19:58002160..58017859	hg19	UCSC Ensembl

Cytoband

19q13.43

Allele length

Assembly	Allele length
hg38	15700
hg19	15700

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6972014, essv6933050, essv6948329, essv6832359, essv6689105, essv6863705, essv6858867, essv6682624, essv6937414, essv6967587, essv6782521, essv6721766, essv6820962, essv6678938, essv6741966, essv6776726, essv6725588, essv6835948, essv6842353, essv6877508, essv6703616, essv6902313, essv6717928, essv6895641, essv6761715, essv6828793, essv6801398, essv6928865, essv6815120, essv6950276, essv6954444, essv6714010, essv6735859, essv6780593, essv6696774, essv6674901, essv6797201, essv6961120, essv6937415, essv6773204, essv6784723, essv6733264, essv6852891, essv6717698, essv6758916, essv6888838, essv6666586, essv6941513, essv6703615, essv6668778, essv6913753, essv6746843, essv6761716, essv6921466

Samples

SSM059, SSM008, SSM071, SSM027, SSM024, SSM045, SSM065, SSM087, SSM039, SSM009, SSM042, SSM088, SSM028, SSM092, SSM021, SSM047, SSM061, SSM029, SSM096, SSM026, SSM017, SSM019, SSM035, SSM032, SSM003, SSM031, SSM067, SSM044, SSM086, SSM033, SSM066, SSM006, SSM068, SSM081, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM080, SSM037, SSM022, SSM010, SSM025, SSM043, SSM052, SSM098, SSM049, SSM030, SSM012

Known Genes

ZNF419, ZNF773

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2719071

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	51
Observed Complex	0
Frequency	n/a