A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2718930



Internal ID9953222
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:54812663..54830568hg38UCSC Ensembl
Outerchr19:55324118..55342023hg19UCSC Ensembl
Cytoband19q13.42
Allele length
AssemblyAllele length
hg3817906
hg1917906
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6738672, essv6937390, essv6780570, essv6880268, essv6933033, essv6758906, essv6717543, essv6828778, essv6846781, essv6717913, essv6782377, essv6668767, essv6898432, essv6874507, essv6804251, essv6883105, essv6721749, essv6961086, essv6717587, essv6744780, essv6925428, essv6750436, essv6863680, essv6666558
SamplesSSM059, SSM008, SSM073, SSM093, SSM050, SSM088, SSM021, SSM018, SSM029, SSM026, SSM094, SSM067, SSM044, SSM006, SSM085, SSM020, SSM053, SSM080, SSM091, SSM099, SSM043, SSM056, SSM030
Known GenesKIR2DL4, KIR3DL1, LOC100287534
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2718930
Frequency
Sample Size96
Observed Gain0
Observed Loss23
Observed Complex0
Frequencyn/a


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