A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2718745



Internal ID10302381
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:50678722..50679052hg38UCSC Ensembl
Outerchr19:51181979..51182309hg19UCSC Ensembl
Cytoband19q13.33
Allele length
AssemblyAllele length
hg38331
hg19331
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6733212, essv6717889, essv6858812, essv6941470, essv6832324, essv6928820, essv6948018, essv6905872, essv6812980, essv6954402, essv6788854, essv6880250
SamplesSSM087, SSM013, SSM093, SSM047, SSM069, SSM019, SSM003, SSM081, SSM076, SSM022, SSM025, SSM043
Known GenesSHANK1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2718745
Frequency
Sample Size96
Observed Gain0
Observed Loss12
Observed Complex0
Frequencyn/a


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