A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2718654



Internal ID9952946
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:46389312..46389677hg38UCSC Ensembl
Outerchr19:46892569..46892934hg19UCSC Ensembl
Cytoband19q13.32
Allele length
AssemblyAllele length
hg38366
hg19366
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6797148, essv6792962, essv6883082, essv6769296, essv6925389, essv6852836, essv6824682
SamplesSSM086, SSM064, SSM071, SSM094, SSM079, SSM018, SSM070
Known GenesPPP5C
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2718654
Frequency
Sample Size96
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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