Variant Details

Variant: esv2718344

Internal ID

9952635

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr19:21720178..21722790	hg38	UCSC Ensembl
Outer	chr19:21902980..21905592	hg19	UCSC Ensembl

Cytoband

19p12

Allele length

Assembly	Allele length
hg38	2613
hg19	2613

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6744715, essv6788805, essv6668720, essv6758868, essv6756324, essv6696691, essv6820873, essv6871477, essv6703533, essv6769255, essv6699394, essv6729314, essv6892089, essv6937314, essv6710334, essv6733163, essv6880212, essv6780490, essv6967472, essv6735810, essv6682538, essv6954347, essv6753291, essv6738612, essv6776667, essv6689051, essv6812941, essv6863590, essv6750378, essv6885762, essv6781310, essv6846718, essv6858755, essv6804206, essv6666611, essv6898363, essv6692440, essv6784641, essv6932939, essv6941419, essv6914608, essv6801304, essv6717827, essv6761656, essv6807135, essv6685912, essv6707015, essv6946111, essv6693965, essv6773122, essv6725490, essv6852784, essv6960985, essv6824642, essv6678858, essv6843523, essv6810129

Samples

SSM059, SSM036, SSM008, SSM027, SSM075, SSM045, SSM046, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM073, SSM093, SSM050, SSM074, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM084, SSM090, SSM021, SSM047, SSM069, SSM061, SSM026, SSM035, SSM032, SSM067, SSM086, SSM033, SSM066, SSM085, SSM068, SSM040, SSM072, SSM020, SSM078, SSM053, SSM005, SSM037, SSM076, SSM022, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM049, SSM056, SSM030

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2718344

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	57
Observed Complex	0
Frequency	n/a