Variant Details

Variant: esv2718335

Internal ID

9952626

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr19:21518987..22435411	hg38	UCSC Ensembl
Outer	chr19:21701789..22618213	hg19	UCSC Ensembl

Cytoband

19p12

Allele length

Assembly	Allele length
hg38	916425
hg19	916425

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6839646, essv6788806, essv6744715, essv6788805, essv6925346, essv6846716, essv6682541, essv6668720, essv6960983, essv6716943, essv6758868, essv6716909, essv6716920, essv6745987, essv6685911, essv6863591, essv6880213, essv6756324, essv6909772, essv6858753, essv6741887, essv6696691, essv6828713, essv6971925, essv6801305, essv6820873, essv6885761, essv6871477, essv6703533, essv6824641, essv6883057, essv6769255, essv6699394, essv6729314, essv6766345, essv6761655, essv6725489, essv6868396, essv6721670, essv6807132, essv6797107, essv6892089, essv6950173, essv6967471, essv6792911, essv6914597, essv6909770, essv6784639, essv6937314, essv6729313, essv6766344, essv6710334, essv6835861, essv6816315, essv6666432, essv6874430, essv6733163, essv6880212, essv6954346, essv6874209, essv6750377, essv6721671, essv6674779, essv6780490, essv6967472, essv6946112, essv6797106, essv6846714, essv6839647, essv6735810, essv6914584, essv6713936, essv6741883, essv6710333, essv6682538, essv6954347, essv6753291, essv6738612, essv6780489, essv6909769, essv6950172, essv6841553, essv6678857, essv6898362, essv6703534, essv6810128, essv6776667, essv6689051, essv6812941, essv6758867, essv6863590, essv6750378, essv6885762, essv6781321, essv6820874, essv6960986, essv6781310, essv6954344, essv6846718, essv6937313, essv6707014, essv6892090, essv6766343, essv6761654, essv6858755, essv6874198, essv6843520, essv6868395, essv6971924, essv6807136, essv6780491, essv6804206, essv6901375, essv6801303, essv6932941, essv6666431, essv6682537, essv6921332, essv6666611, essv6901378, essv6898363, essv6843522, essv6750374, essv6692440, essv6947584, essv6846715, essv6824644, essv6820872, essv6828712, essv6784641, essv6713937, essv6932939, essv6921333, essv6941419, essv6666434, essv6914608, essv6913664, essv6801304, essv6674777, essv6820871, essv6717827, essv6761656, essv6753289, essv6820875, essv6807135, essv6888775, essv6863592, essv6852787, essv6685912, essv6707015, essv6699392, essv6946111, essv6921330, essv6756323, essv6954345, essv6693965, essv6784642, essv6773122, essv6741884, essv6685913, essv6666430, essv6693976, essv6753290, essv6874231, essv6816316, essv6807133, essv6725490, essv6946116, essv6914619, essv6888776, essv6744716, essv6852784, essv6784640, essv6773121, essv6960985, essv6858756, essv6967474, essv6863589, essv6868394, essv6902226, essv6824642, essv6797105, essv6678858, essv6841564, essv6852785, essv6843523, essv6947573, essv6909774, essv6810129, essv6689052, essv6960987, essv6699393, essv6668719, essv6692439, essv6913665, essv6692438

Samples

SSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM073, SSM093, SSM050, SSM074, SSM042, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM028, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM061, SSM029, SSM096, SSM026, SSM089, SSM017, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM052, SSM049, SSM056, SSM030, SSM063, SSM012

Known Genes

LOC641367, ZNF100, ZNF208, ZNF257, ZNF429, ZNF43, ZNF676, ZNF729, ZNF98

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2718335

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	86
Observed Complex	0
Frequency	n/a