A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2718300



Internal ID9952591
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:19917200..20105915hg38UCSC Ensembl
Outerchr19:20028009..20216724hg19UCSC Ensembl
Cytoband19p12
Allele length
AssemblyAllele length
hg38188716
hg19188716
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6885759, essv6780821, essv6932938, essv6839643, essv6858737, essv6764002, essv6812938, essv6812936, essv6960979, essv6788803, essv6835858, essv6937308, essv6703529, essv6804203, essv6666419, essv6905817, essv6756317, essv6812937, essv6902222, essv6883055, essv6750368, essv6696688, essv6901370, essv6841487, essv6780482, essv6814155
SamplesSSM100, SSM083, SSM087, SSM039, SSM013, SSM009, SSM073, SSM058, SSM021, SSM069, SSM029, SSM062, SSM026, SSM094, SSM067, SSM001, SSM082, SSM020, SSM037, SSM076, SSM010, SSM095, SSM056, SSM012
Known GenesZNF682, ZNF90, ZNF93
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2718300
Frequency
Sample Size96
Observed Gain0
Observed Loss24
Observed Complex0
Frequencyn/a


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