A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717915



Internal ID9952206
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:2835634..2836425hg38UCSC Ensembl
Outerchr19:2835632..2836423hg19UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg38792
hg19792
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6674731, essv6852733, essv6678829, essv6967402, essv6892062, essv6713900, essv6717782, essv6950133, essv6858674, essv6925310, essv6937265, essv6738574, essv6666355
SamplesSSM027, SSM086, SSM042, SSM043, SSM031, SSM032, SSM024, SSM050, SSM097, SSM029, SSM021, SSM087, SSM018
Known GenesZNF554
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717915
Frequency
Sample Size96
Observed Gain0
Observed Loss13
Observed Complex0
Frequencyn/a


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