A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717876



Internal ID9952167
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:2128496..2129161hg38UCSC Ensembl
Outerchr19:2128495..2129160hg19UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg38666
hg19666
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6769228, essv6835824, essv6780462, essv6971871, essv6954300, essv6788772, essv6895522, essv6756285, essv6832242, essv6682495, essv6843472, essv6713896, essv6753255, essv6729282, essv6812911, essv6747523, essv6721644, essv6792875, essv6761629, essv6758836, essv6921283, essv6967395, essv6733120, essv6797064, essv6813754, essv6703484
SamplesSSM027, SSM082, SSM055, SSM033, SSM084, SSM061, SSM042, SSM064, SSM025, SSM071, SSM057, SSM039, SSM067, SSM017, SSM009, SSM028, SSM047, SSM069, SSM046, SSM044, SSM098, SSM076, SSM058, SSM059, SSM081, SSM070
Known GenesAP3D1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717876
Frequency
Sample Size96
Observed Gain0
Observed Loss26
Observed Complex0
Frequencyn/a


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