A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717680



Internal ID9951971
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:79694283..79694501hg38UCSC Ensembl
Outerchr18:77454283..77454501hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38219
hg19219
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6885645, essv6941275, essv6967210, essv6863403, essv6674549, essv6871347, essv6960743, essv6868195, essv6820673, essv6858524, essv6666163
SamplesSSM027, SSM087, SSM088, SSM090, SSM029, SSM026, SSM089, SSM031, SSM078, SSM022, SSM095
Known GenesCTDP1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717680
Frequency
Sample Size96
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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