A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717650



Internal ID9951941
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:79473400..79474041hg38UCSC Ensembl
Outerchr18:77233400..77234041hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38642
hg19642
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6843353, essv6901258, essv6832131, essv6780335, essv6877318, essv6846583, essv6750266, essv6816179, essv6792766, essv6665433, essv6967205, essv6902090, essv6888671, essv6905709, essv6692320
SamplesSSM027, SSM092, SSM013, SSM036, SSM084, SSM067, SSM077, SSM012, SSM100, SSM056, SSM085, SSM096, SSM004, SSM081, SSM070
Known GenesNFATC1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717650
Frequency
Sample Size96
Observed Gain0
Observed Loss15
Observed Complex0
Frequencyn/a


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