A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717554



Internal ID9951845
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:78584260..78584975hg38UCSC Ensembl
Outerchr18:76344260..76344975hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38716
hg19716
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6913480, essv6741768, essv6710202, essv6852544, essv6699306, essv6905693, essv6882928, essv6780317, essv6792750, essv6916923, essv6937101, essv6877308, essv6971733, essv6801141, essv6717671, essv6784464, essv6921115, essv6843341, essv6796926, essv6895407, essv6863389, essv6807000, essv6678675, essv6960719, essv6954156, essv6824471, essv6725341, essv6812865, essv6928648, essv6840542, essv6880092, essv6832118, essv6871341, essv6674527
SamplesSSM071, SSM045, SSM079, SSM038, SSM013, SSM009, SSM093, SSM074, SSM088, SSM041, SSM028, SSM092, SSM084, SSM090, SSM021, SSM026, SSM017, SSM019, SSM094, SSM032, SSM031, SSM067, SSM086, SSM068, SSM081, SSM072, SSM015, SSM016, SSM010, SSM070, SSM025, SSM043, SSM052, SSM098
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717554
Frequency
Sample Size96
Observed Gain0
Observed Loss34
Observed Complex0
Frequencyn/a


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