A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717542



Internal ID9951833
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:78502902..78503076hg38UCSC Ensembl
Outerchr18:76262902..76263076hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38175
hg19175
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6685769, essv6852541, essv6717669, essv6839460, essv6682382, essv6816168, essv6729128, essv6901248, essv6835688, essv6960715, essv6703360, essv6666137, essv6895404, essv6971728, essv6784460, essv6863388, essv6801139, essv6758775, essv6824468, essv6796924, essv6692311, essv6696471, essv6788647, essv6888664, essv6882926, essv6710200, essv6688951, essv6721517, essv6868183, essv6810017, essv6954154, essv6713763, essv6949986, essv6891961, essv6776505, essv6967182, essv6699305, essv6750259
SamplesSSM100, SSM059, SSM036, SSM083, SSM071, SSM027, SSM024, SSM075, SSM046, SSM079, SSM038, SSM097, SSM039, SSM042, SSM088, SSM041, SSM028, SSM069, SSM029, SSM096, SSM026, SSM089, SSM035, SSM094, SSM044, SSM086, SSM033, SSM066, SSM068, SSM072, SSM082, SSM037, SSM077, SSM025, SSM034, SSM043, SSM098, SSM056
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717542
Frequency
Sample Size96
Observed Gain0
Observed Loss38
Observed Complex0
Frequencyn/a


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