A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717408



Internal ID9951699
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:76635213..76636044hg38UCSC Ensembl
Outerchr18:74347170..74348001hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38832
hg19832
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6717660, essv6735707, essv6874282, essv6868166, essv6960697, essv6824457, essv6750254, essv6880088, essv6788637, essv6949974, essv6839450, essv6871335, essv6835677, essv6898243, essv6810011, essv6954143, essv6928637, essv6858485, essv6776496, essv6945885, essv6913467, essv6828536, essv6710185, essv6901241, essv6682369, essv6779621, essv6873043, essv6758770, essv6744590, essv6738470, essv6902068, essv6852524, essv6891954, essv6715976, essv6696460, essv6780306, essv6772932, essv6666117, essv6792735, essv6763894, essv6713755, essv6812816
SamplesSSM100, SSM059, SSM008, SSM083, SSM024, SSM075, SSM011, SSM079, SSM065, SSM087, SSM097, SSM093, SSM050, SSM042, SSM041, SSM090, SSM069, SSM029, SSM062, SSM026, SSM089, SSM019, SSM003, SSM067, SSM086, SSM033, SSM066, SSM006, SSM082, SSM015, SSM053, SSM080, SSM037, SSM076, SSM091, SSM070, SSM025, SSM099, SSM043, SSM049, SSM056, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717408
Frequency
Sample Size96
Observed Gain0
Observed Loss42
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer