A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2717085



Internal ID10300721
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:49493282..49494019hg38UCSC Ensembl
Outerchr18:47019652..47020389hg19UCSC Ensembl
Cytoband18q21.1
Allele length
AssemblyAllele length
hg38738
hg19738
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6710159, essv6835648, essv6744564, essv6796880, essv6891921, essv6960638, essv6692274, essv6729099, essv6852467, essv6685728, essv6885610, essv6872720, essv6792703, essv6816140, essv6863324, essv6868127, essv6812795, essv6776468, essv6674445, essv6688917, essv6666059, essv6824428, essv6809980, essv6788607, essv6725298, essv6678631, essv6895366, essv6820607, essv6967110, essv6871311, essv6901215
SamplesSSM100, SSM036, SSM071, SSM027, SSM075, SSM045, SSM046, SSM011, SSM079, SSM097, SSM088, SSM041, SSM090, SSM069, SSM029, SSM026, SSM089, SSM035, SSM032, SSM031, SSM086, SSM066, SSM082, SSM078, SSM053, SSM077, SSM076, SSM070, SSM095, SSM034, SSM098
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2717085
Frequency
Sample Size96
Observed Gain0
Observed Loss31
Observed Complex0
Frequencyn/a


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