Variant Details

Variant: esv2715906

Internal ID

10299542

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr1:108190683..108194647	hg38	UCSC Ensembl
Outer	chr1:108733305..108737269	hg19	UCSC Ensembl

Cytoband

1p13.3

Allele length

Assembly	Allele length
hg38	3965
hg19	3965

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6871776, essv6941871, essv6886046, essv6877727, essv6777008, essv6954875, essv6840044, essv6697044, essv6789233, essv6946567, essv6714318, essv6756609, essv6921812, essv6859288, essv6669092, essv6793380, essv6773522, essv6736046, essv6906183, essv6696231, essv6889083, essv6669844, essv6925767, essv6917515, essv6836268, essv6719431, essv6825066, essv6699678, essv6759119, essv6785365, essv6707325, essv6832670, essv6686219, essv6917385, essv6816686, essv6780961, essv6934595, essv6801680, essv6829082, essv6817353, essv6679247, essv6864060, essv6750670, essv6961691, essv6753565, essv6749309, essv6689326, essv6745007, essv6950635, essv6950851, essv6910133, essv6703917, essv6898679, essv6883311, essv6725934, essv6733545

Samples

SSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM046, SSM038, SSM097, SSM039, SSM009, SSM073, SSM093, SSM050, SSM088, SSM041, SSM057, SSM023, SSM058, SSM084, SSM018, SSM061, SSM096, SSM026, SSM089, SSM017, SSM019, SSM035, SSM003, SSM031, SSM067, SSM001, SSM014, SSM033, SSM066, SSM006, SSM068, SSM081, SSM040, SSM082, SSM007, SSM015, SSM078, SSM005, SSM080, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM004, SSM043, SSM049

Known Genes

SLC25A24

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2715906

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	56
Observed Complex	0
Frequency	n/a