A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2715183



Internal ID9949469
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:89634416..89635789hg38UCSC Ensembl
Outerchr16:89700824..89702197hg19UCSC Ensembl
Cytoband16q24.3
Allele length
AssemblyAllele length
hg381374
hg191374
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6772699, essv6835469, essv6792504, essv6863108, essv6953902, essv6920856, essv6888496, essv6905487, essv6706757, essv6728897, essv6966787, essv6867912, essv6732764, essv6788408, essv6665680, essv6913223, essv6796674, essv6721303, essv6949735, essv6936845, essv6674165, essv6971481, essv6941008, essv6688789, essv6685593, essv6945646, essv6820379
SamplesSSM071, SSM027, SSM024, SSM046, SSM065, SSM013, SSM088, SSM023, SSM028, SSM021, SSM047, SSM069, SSM029, SSM096, SSM089, SSM017, SSM035, SSM031, SSM044, SSM040, SSM082, SSM015, SSM078, SSM022, SSM070, SSM025, SSM034
Known GenesDPEP1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2715183
Frequency
Sample Size96
Observed Gain0
Observed Loss27
Observed Complex0
Frequencyn/a


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