A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2715047



Internal ID9949332
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:88823454..88823661hg38UCSC Ensembl
Outerchr16:88889862..88890069hg19UCSC Ensembl
Cytoband16q24.3
Allele length
AssemblyAllele length
hg38208
hg19208
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6674157, essv6898069, essv6877130, essv6824229, essv6839250, essv6788393
SamplesSSM083, SSM079, SSM092, SSM069, SSM031, SSM099
Known GenesGALNS
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2715047
Frequency
Sample Size96
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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