Variant Details

Variant: esv2714390

Internal ID

10298026

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr16:46383469..46392958	hg38	UCSC Ensembl
Outer	chr16:46417381..46426870	hg19	UCSC Ensembl

Cytoband

16q11.2

Allele length

Assembly	Allele length
hg38	9490
hg19	9490

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv364e201

Supporting Variants

essv6688736, essv6953832, essv6895152, essv6815926, essv6928376, essv6815923, essv6828268, essv6732685, essv6752940, essv6692069, essv6839194, essv6943284, essv6820313, essv6721246, essv6949642, essv6665546, essv6901811, essv6713483, essv6940933, essv6863044, essv6796604, essv6750044, essv6831817, essv6916633, essv6735524, essv6820315, essv6870808, essv6936764, essv6870797, essv6960208, essv6792406, essv6839172, essv6753486, essv6966673, essv6852064, essv6895150, essv6803890, essv6806781, essv6909420, essv6867838, essv6772624, essv6936763, essv6784163, essv6682089, essv6863039, essv6831840, essv6725025, essv6940931, essv6742509, essv6721236, essv6682086, essv6877090, essv6788333, essv6888435, essv6742520, essv6870821, essv6812616, essv6905434, essv6932461, essv6924881, essv6839192, essv6815922, essv6678364, essv6812618, essv6828270, essv6852066, essv6858036, essv6835413, essv6758577, essv6932460, essv6728842, essv6703024, essv6888436, essv6835407, essv6788335, essv6665552, essv6966686, essv6879866, essv6678362, essv6776799, essv6682090, essv6717350, essv6945585, essv6776788, essv6971406, essv6779987, essv6761351, essv6885440, essv6905430, essv6928375, essv6717348, essv6703023, essv6703022, essv6940934, essv6835368, essv6714243, essv6674062, essv6699115, essv6800819, essv6932458, essv6966684, essv6752939, essv6741532, essv6763716, essv6820312, essv6738258, essv6911885, essv6960199, essv6703026, essv6975829, essv6742342, essv6776200, essv6690966, essv6882715, essv6766075, essv6674063, essv6800812, essv6936765, essv6725026, essv6725024, essv6674055, essv6732689, essv6913159, essv6909416, essv6665549, essv6895149, essv6971409, essv6732673, essv6779989, essv6909419, essv6747212, essv6831846, essv6796603, essv6696119, essv6940936, essv6858052, essv6874059, essv6852067, essv6744391, essv6871150, essv6888439, essv6924882, essv6911896, essv6879863, essv6874063, essv6713478, essv6877092, essv6758576, essv6882721, essv6688702, essv6685559, essv6871144, essv6784162, essv6768917, essv6713482, essv6971408, essv6885444, essv6846367, essv6913158, essv6960210, essv6735522, essv6824186, essv6867839, essv6779986, essv6928400, essv6949672, essv6882719, essv6800813, essv6728836, essv6891733, essv6721237, essv6846368, essv6901812, essv6871140, essv6960200, essv6699117, essv6665547, essv6843013, essv6744389, essv6674051, essv6920781, essv6898032, essv6928377, essv6809800, essv6835414, essv6678363, essv6732686, essv6913149, essv6800814, essv6692065, essv6870832, essv6877089, essv6891734, essv6690988, essv6755962, essv6766077, essv6696121, essv6728841, essv6741530, essv6709926, essv6792416, essv6858037, essv6682085, essv6709948, essv6776215, essv6744390, essv6796600, essv6796602, essv6885439, essv6843023, essv6839173, essv6895148, essv6852062, essv6784161, essv6867844, essv6753375, essv6867840, essv6971410, essv6678366, essv6763714, essv6913148, essv6809801, essv6747213, essv6838542, essv6916637, essv6891735, essv6824185, essv6945550, essv6920777, essv6852063, essv6721241, essv6688703, essv6685558, essv6776199, essv6741529, essv6721195, essv6717349, essv6810354

Samples

SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM050, SSM074, SSM042, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM028, SSM092, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM061, SSM029, SSM096, SSM062, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM056, SSM063, SSM012

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2714390

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	93
Observed Complex	0
Frequency	n/a