A curated catalogue of human genomic structural variation




Variant Details

Variant: esv27033



Internal ID11044266
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:63087706..63253263hg38UCSC Ensembl
Innerchr15:63379905..63545462hg19UCSC Ensembl
Innerchr15:61166958..61332515hg18UCSC Ensembl
Cytoband15q22.2
Allele length
AssemblyAllele length
hg38165558
hg19165558
hg18165558
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv15078, esv14861
SamplesNA07037, NA19225
Known GenesLACTB, RAB8B, RPS27L
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv27033
Frequency
Sample Size40
Observed Gain1
Observed Loss1
Observed Complex0
Frequencyn/a


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