A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2676638



Internal ID9596057
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:25529642..25529783hg38UCSC Ensembl
chr6:25529870..25530011hg19UCSC Ensembl
Cytoband6p22.2
Allele length
AssemblyAllele length
hg38142
hg19142
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6067633, essv6038667, essv5397287, essv6486725, essv6361674, essv6039070, essv6110789, essv5938343, essv6130432, essv5783672, essv5817285, essv6413542, essv6056848, essv5599062, essv6380374, essv6195570, essv5546562, essv6282252, essv5557168, essv6456814, essv5633179, essv6405138, essv5983109, essv6477466, essv6438140, essv6393136, essv6049783, essv5738756, essv5942728, essv6050447, essv5929311, essv6369215, essv5644205, essv5572019, essv6274478, essv6349754, essv6227972, essv5542351, essv5677580, essv6028423, essv6100206, essv5877174, essv5748981, essv5534701, essv5994981, essv6520863, essv5880800, essv5978492, essv6423268, essv5995195, essv5464340, essv5957888, essv6003290, essv6163377, essv6210556, essv5444181, essv6122184, essv5801390, essv5431523, essv6389446, essv6550847, essv6215196, essv5848336, essv5685181, essv6035501, essv5491721, essv5471724, essv6580265, essv5707368, essv6568926, essv5924911, essv6130439, essv5718440, essv5435737, essv5959567, essv6112235, essv6351227, essv5900775, essv6408484, essv6400733, essv6168731, essv6147118, essv6354519, essv5490779, essv5854164, essv5481452, essv6557016, essv6435860, essv6518696, essv6153175, essv5594299, essv6425661, essv5604301, essv5437164, essv5621916, essv6090410, essv5722759, essv6550654, essv5598288, essv5402914, essv5980328, essv6070569, essv5591473, essv5540726, essv5439977, essv5643476, essv6117040, essv5583533, essv6231989, essv6065323, essv5599993, essv6488975, essv6289990, essv6044505, essv6575049, essv6580912, essv6488343, essv5854218, essv5697027, essv6190323, essv6161095, essv5753488, essv6404546, essv5829987, essv5727983, essv5569230, essv5496600, essv5932232, essv5674135, essv6119463, essv5800595, essv5694838, essv6255381, essv5966477, essv6307465, essv5814490, essv6090238, essv6313625, essv6444860, essv6507976, essv5496354, essv5758881, essv5851218, essv5851874, essv6310620, essv5694717, essv5620264, essv6046238, essv6241131, essv6360250, essv5580194, essv6525226, essv5716087, essv6338237, essv6089334, essv6547841, essv6218307, essv6008679, essv6596322, essv6260960, essv5518020, essv5863801, essv6341421, essv6556645, essv5955327, essv6290582, essv5840260, essv5556634, essv5473401, essv5655657, essv6299267, essv6389079, essv5902313, essv5792594, essv6506800, essv6444532, essv6339357, essv6295638, essv6279636, essv6197446, essv6095142, essv6155001, essv5927542, essv6274351, essv5827994, essv6523082, essv6288303, essv6067964, essv5912705, essv5820330, essv5758508, essv6080985, essv6151389, essv6140454, essv6113638, essv5741909, essv6440066, essv5844403, essv5767963, essv5771614, essv5498526, essv5721290, essv6408967, essv5623491, essv6047458, essv6445243, essv6519052, essv6050847, essv5799745, essv5481433, essv6267336, essv6037110, essv6545195, essv5791079, essv6226653, essv6170261, essv5700127, essv5540300, essv6008973, essv5524611, essv5707811, essv6524315, essv5436701, essv5574377, essv6352675, essv5724469, essv6438596, essv5987157, essv6358700, essv5753740, essv5483311, essv5845334, essv6312778, essv6283138, essv5410437, essv5570698, essv5613000, essv5654998, essv6310660, essv5785865, essv5606153, essv6217415, essv6071768, essv5829115, essv5620587, essv6437625, essv5797146, essv5573561, essv6519429, essv5739295, essv5896336, essv5541311, essv5583313, essv5575125, essv5529412, essv5921785, essv6070323, essv6325174, essv6423644, essv6366751, essv5800153, essv5499649, essv5931407, essv6582734, essv5817022, essv5814516, essv5414457, essv6075953, essv5611008, essv6131430, essv6459416, essv6367122, essv6108835, essv5766993, essv5399968, essv5475234, essv5397960, essv5734706, essv5627675, essv5739706, essv6175423, essv6518517, essv6467078, essv6318849, essv5717048, essv6570240, essv6308287, essv6252694, essv5779632, essv6154585, essv6194588, essv6556050, essv5410399, essv6115852, essv5887919, essv6524215, essv6553993, essv6403871, essv6453847, essv6176650, essv6448270, essv5597327, essv5509061, essv5406436, essv6537824, essv5829617, essv5613160, essv5582144, essv5632671, essv5874841, essv6011728, essv6005096, essv6587849, essv6157706, essv6260829, essv6412323, essv6346250, essv5846496, essv5491760, essv6352208, essv5410386, essv6327977, essv6443780, essv5777544, essv6306401, essv6046674, essv6220331, essv5898173, essv5494414, essv5951858, essv6585214, essv5800039, essv5565548, essv6195996, essv5988426, essv6514304, essv6549520, essv5450210, essv6005734, essv5574349, essv6554376, essv6227835, essv5399754, essv6017948, essv5684141, essv5408264, essv5825011, essv6149195, essv6579723, essv6442871, essv6376165, essv6166961, essv5567500, essv5828560, essv6170921, essv6135875, essv5819559, essv6168740, essv6287030, essv5673383, essv5628952, essv6501668, essv6344314, essv6295505, essv5768566, essv5868564, essv5784991, essv5405515, essv6077951, essv5748711, essv6288965, essv6460694, essv6330980, essv5759397, essv6592992, essv5652747, essv6188500, essv5573147, essv6569759, essv6542357, essv5621392, essv6378404, essv6095189, essv6382445, essv5596983, essv6132453, essv5848411, essv5866584, essv6459373, essv5773676, essv5503361, essv6433861, essv6047302, essv6464639, essv5734277, essv5794903, essv6220133, essv6173952, essv6104818, essv6233267, essv5414922, essv6310266, essv6574088, essv5414896, essv5708738, essv5689077, essv5468262, essv5654890, essv5674524, essv5585773, essv6589261, essv5933223, essv6589142, essv5568789, essv6243930, essv5670678, essv5415308, essv5990507, essv6584332, essv5767430, essv6546885, essv5743463, essv5661826, essv6337872, essv6252687, essv5816996, essv6202064, essv5589282, essv6365965, essv6034040, essv5770071, essv5932263, essv5710905, essv6543350, essv5642684, essv6493544, essv6273967, essv5439854, essv6146498
SamplesHG01357, HG00613, NA19012, HG00309, HG00157, NA18605, HG01440, NA07347, NA19712, HG00257, NA18520, NA18616, NA20771, HG00619, NA18534, HG01353, NA18530, NA18871, NA19819, HG00551, HG00328, NA19437, NA19114, HG00705, HG00437, HG00500, HG01173, HG01083, NA20510, HG00274, HG00464, NA18501, NA20796, HG00565, NA18526, NA20535, NA19469, NA20346, NA10847, NA18545, NA18603, HG01389, HG00463, HG00657, NA19359, HG00614, HG01051, HG01365, HG01082, NA18953, NA12828, HG00428, HG00475, NA18947, HG00542, HG01174, NA19449, NA19920, HG01350, NA12005, HG00139, HG00739, NA18546, HG00683, HG00334, HG00581, NA18963, NA19685, HG00404, NA07051, HG00280, HG01168, NA20798, HG00319, HG00737, HG00253, NA18505, NA18557, NA20755, NA18943, HG01171, HG00353, NA18949, NA20340, HG01107, NA19463, HG00158, HG00556, NA20505, HG00242, NA11919, NA12763, NA19085, HG00346, HG01384, NA19239, NA18627, HG00593, HG01375, NA19390, HG00421, HG01378, NA20811, NA18536, NA19675, NA18622, HG00259, NA19443, NA19471, HG01048, HG01061, NA18617, NA18990, HG00692, NA18636, NA18592, NA19083, NA19088, NA12761, NA18956, NA19429, NA19908, HG00338, NA18959, NA18609, HG00125, NA11831, NA11894, NA18916, HG00634, NA18593, HG00284, HG01187, NA12234, NA19700, HG00343, NA12144, HG00662, NA19324, NA19000, NA19360, HG00267, NA19380, HG01111, NA19395, NA12716, HG00233, HG01516, HG00640, NA20348, NA12778, NA19384, NA18986, NA19102, NA20753, NA12275, NA18510, HG00501, HG00672, HG01170, HG01069, HG00249, HG00277, HG01080, HG00524, HG01494, NA20542, NA19720, HG00534, HG00525, HG00377, NA18579, NA19318, NA19711, HG00236, NA18945, NA18606, NA18543, NA18940, NA12891, NA20525, NA20581, NA19921, HG00590, HG00595, NA19138, NA19376, HG01095, NA19391, NA19723, NA19078, HG01334, NA12749, NA18867, NA19394, NA19403, NA18565, HG00138, HG00663, NA12889, NA20289, HG00580, NA18544, NA18602, HG00608, NA18577, HG01390, NA12878, NA18614, HG00530, NA20317, NA11992, NA19770, HG00281, HG00285, NA18917, NA11993, NA19399, HG00656, NA12842, HG00142, HG01366, NA18571, NA18924, NA19371, NA19198, NA19916, HG01108, NA18610, NA20758, HG01251, HG00693, HG01125, NA11829, HG01177, NA19240, NA19346, NA20768, HG01498, HG00275, HG00324, NA12717, HG00641, NA18532, NA18574, NA18853, HG00183, HG00137, HG01462, HG00626, HG01377, HG00476, HG00671, NA19087, NA20772, NA19092, NA20538, HG00702, HG00704, NA18555, NA19385, NA19750, HG00271, NA19007, NA19456, NA19779, NA18519, NA19065, NA07000, NA19746, HG00531, NA18980, HG00327, NA19137, NA12718, HG00313, HG00152, HG01518, NA12249, NA18861, NA19436, HG00318, HG00536, HG00607, NA12750, NA19321, HG01250, NA20526, HG00344, NA20785, HG01075, HG01055, NA18952, HG00145, HG00369, NA19783, NA19401, HG00449, NA18550, NA18570, NA19003, HG00707, NA18511, NA20299, NA20802, NA18948, NA11931, HG00117, HG01492, NA20529, NA19010, HG00375, NA18608, NA20588, NA12776, HG01461, HG00651, HG00578, NA19108, HG00331, NA18488, NA12341, NA12044, HG01551, NA19147, NA19776, HG00479, NA19654, HG00247, HG01521, HG00256, NA18632, NA20770, HG00244, HG00635, NA19762, HG00543, HG01254, HG00321, HG00339, NA19726, NA19383, HG00250, NA18508, NA19054, NA20819, NA12282, NA20356, NA20515, HG00472, NA19652, HG00583, NA18566, HG00337, NA19068, HG00140, NA18563, NA18618, NA07357, NA20504, HG00610, HG01495, NA18991, NA20807, NA19396, NA20754, HG00141, NA19397, HG00330, NA19398, NA19440, HG00150, HG00419, NA18547, HG00258, HG01113, HG01136, NA18973, NA20282, NA20336, HG00264, NA19773, NA19658, HG00637, HG00254, NA19663, HG00584, NA19316, HG00133, NA18539, HG00114, NA12006, NA19213, NA19676, HG00620, NA19377, HG00124, NA19785, HG00108, NA18620, NA19759, HG00268, NA19375, NA19393, NA20126, HG00629, NA18498, NA20826, NA18486, NA06986, NA18522, NA19238, NA20344, HG00260, NA19657, NA18558, NA18977, HG00239, NA19901, HG00273, HG00282, HG00232, HG01356, NA20814, NA20818, HG00478, NA18564, HG00116, NA19347, NA19332, HG00513, HG00153, HG00329, HG00512, HG00246, NA18562, NA19074, HG01060, NA19382
Known GenesLRRC16A
MethodMerging
AnalysisNo reference, merging analysis
PlatformMerging
Comments
Reference1000_Genomes_Consortium_Phase_1
Pubmed ID23128226
Accession Number(s)esv2676638
Frequency
Sample Size1151
Observed Gain0
Observed Loss439
Observed Complex0
Frequencyn/a


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