A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2666269



Internal ID9585688
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32642539..32657945hg38UCSC Ensembl
Outerchr6:32642168..32658315hg38UCSC Ensembl
Innerchr6:32610316..32625722hg19UCSC Ensembl
Outerchr6:32609945..32626092hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3816148
hg1916148
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1110e199
Supporting Variantsessv6086028, essv6419235, essv5521944, essv5404987, essv5890838, essv6427174, essv6321751, essv6398180, essv6320936, essv5656088, essv5470024, essv5861184, essv5585871, essv5732861, essv6159471, essv6316711, essv5433965, essv5520171, essv6290840, essv5672190, essv6100031, essv6139848, essv6164307, essv5565767, essv6263981, essv6525987, essv6444009, essv5727514, essv6234756, essv6389103, essv5604521, essv6322405, essv6071106, essv6283914, essv6343497, essv6590726, essv5425118, essv5739412, essv5787069, essv5700827, essv6426490, essv5517628, essv6259872, essv6164532, essv6270132, essv6558775, essv5793250, essv6463220, essv6402027, essv6181876, essv6238710, essv6223274, essv5526912, essv6195068, essv6366585, essv6493080, essv5713655, essv5646169, essv6002635, essv6224615, essv6097187
SamplesHG00096, HG00114, HG00231, HG00142, HG00249, HG00242, HG00100, HG00257, HG00151, HG00233, HG00244, HG00150, HG00261, HG00127, HG00251, HG00122, HG00247, HG00243, HG00158, HG00139, HG00148, HG00106, HG00236, HG00156, HG00262, HG00160, HG00159, HG00264, HG00108, HG00260, HG00137, HG00133, HG00154, HG00149, HG00245, HG00263, HG00239, HG00250, HG00117, HG00157, HG00140, HG01334, HG00152, HG00146, HG00141, HG00246, HG00126, HG00258, HG00155, HG00119, HG00265, HG00136, HG00237, HG00256, HG00125, HG00111, HG00259, HG00123, HG00112, HG00131, HG00252
Known GenesHLA-DQA1
MethodMerging
AnalysisNo reference, merging analysis
PlatformMerging
Comments
Reference1000_Genomes_Consortium_Phase_1
Pubmed ID23128226
Accession Number(s)esv2666269
Frequency
Sample Size1151
Observed Gain0
Observed Loss61
Observed Complex0
Frequencyn/a


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