Variant Details

Variant: esv2658882

Internal ID

9924987

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr16:51151105..51156011	hg38	UCSC Ensembl
Outer	chr16:51150734..51156581	hg38	UCSC Ensembl
Inner	chr16:51185016..51189922	hg19	UCSC Ensembl
Outer	chr16:51184645..51190492	hg19	UCSC Ensembl

Cytoband

16q12.1

Allele length

Assembly	Allele length
hg38	5848
hg19	5848

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6443606, essv5785505, essv6318110, essv6021933, essv6478839, essv5875378, essv5963068, essv6325085, essv6207369, essv6071017, essv5416678, essv6527884, essv6214125, essv5906603, essv6409713, essv6574613, essv6450177, essv5544147, essv5556038, essv6062213, essv5694758, essv5655729, essv5732642, essv6387472, essv6481645, essv6416201, essv5634636, essv5671528, essv5751656, essv6210941, essv5566669, essv6256606, essv5639969, essv6443897, essv6317715, essv5988382, essv6355470, essv6059482, essv6456479, essv6382877, essv5570022, essv5688603, essv5884510, essv5653502, essv6596070, essv5943762, essv6223683, essv6030830, essv6021578, essv6399864, essv5981702, essv5458647, essv5408136, essv6579961, essv5633599, essv6523838, essv5980003, essv5458254, essv6088576, essv6226433, essv6547385, essv6215791, essv5943398, essv6030018, essv6276910, essv6008540, essv5506253, essv5782867, essv6431402, essv6182516, essv6066333, essv6035231, essv5887000, essv5926799, essv6585487, essv5428725, essv6249762, essv6115950, essv5653401, essv6246978, essv5835784, essv5614520, essv6248015, essv6109374, essv5663552, essv6585731, essv5772994, essv5743667, essv5469557, essv6077729, essv5860053, essv6325196, essv6314660, essv5665149, essv6479434, essv5749796, essv6158601, essv6409450, essv5666291, essv6173591, essv6069937, essv5479017, essv5722383, essv5759716, essv6251105, essv6471610, essv6238167, essv5965067, essv6383835, essv6067214, essv5639758, essv5790435, essv5657021, essv5848101, essv5711307, essv6352800, essv5838001, essv6578645, essv6532894, essv6489876, essv6090993, essv6076133, essv6483273, essv5512323, essv6228736, essv6238446, essv5628000, essv6595080, essv6480368, essv6333965, essv5841597, essv5596325, essv5886844, essv5850107, essv5946609, essv5629936, essv6325197, essv6097616, essv6341699, essv6186467, essv5699180, essv6132589, essv6597785

Samples

HG00626, HG00403, NA19394, HG00650, HG00542, HG00442, HG00536, NA19397, HG00608, NA19466, HG00671, HG00524, NA19399, NA19332, NA19350, NA19359, HG00699, NA19393, NA19377, HG00449, HG00654, NA19443, HG00693, HG00663, NA19446, NA19381, HG00589, HG00501, NA19382, NA19315, NA19448, HG00702, HG00689, HG00448, HG00634, HG00610, NA19457, NA19313, NA19384, HG00537, HG00590, NA19404, HG00512, HG00683, NA19372, NA19371, HG00534, HG00422, NA19471, NA19317, HG00705, HG00427, NA19456, NA19445, HG00530, HG00419, NA19451, HG00464, HG00543, HG00629, NA19437, HG00443, HG00596, HG00557, HG00428, NA19462, NA19347, HG00653, HG00701, HG00657, NA19391, HG00475, NA19455, HG00436, HG00556, HG00584, HG00533, HG00583, HG00500, HG00619, HG00708, HG00692, HG00635, NA19461, HG00651, NA19449, HG00690, HG00404, HG00531, HG00479, HG00684, NA19453, HG00613, HG00525, NA19338, NA19452, HG00704, HG00463, NA19469, NA19436, NA19375, HG00476, NA19440, NA19390, HG00625, NA19434, NA19473, HG00580, NA19435, NA19444, HG00473, HG00607, NA19439, NA19470, NA19428, NA19311, NA19467, HG00662, HG00418, NA19398, HG00707, HG00672, HG00614, HG00513, NA19438, NA19472, HG00421, HG00656, NA19468, NA19474, HG00698, HG00595, HG00472, NA19430, NA19316, NA19312, HG00628, NA19463, NA19429, NA19346, HG00437, HG00581, NA19431

Known Genes

SALL1

Method

Merging

Analysis

No reference, merging analysis

Platform

Merging

Comments

High quality site

Reference

1000_Genomes_Consortium_Phase_1

Pubmed ID

23128226

Accession Number(s)

esv2658882

Frequency

Sample Size	1151
Observed Gain	0
Observed Loss	143
Observed Complex	0
Frequency	n/a