A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2658506



Internal ID9924611
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:69601740..69607084hg38UCSC Ensembl
chr4:70467458..70472802hg19UCSC Ensembl
Cytoband4q13.2
Allele length
AssemblyAllele length
hg385345
hg195345
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5926965, essv6276865, essv6107178, essv6403509, essv5839801, essv5534201, essv6421965, essv6016222, essv6382780, essv6360294, essv6072338, essv6348481, essv5543212, essv6391662, essv5642899, essv5621736, essv5924697, essv5693693, essv5651346, essv6198437, essv5575355, essv5633289, essv6174583, essv5962833, essv5870764, essv6093102, essv5753119, essv6232240, essv5829207, essv5556578, essv6103630, essv6388896, essv6598183, essv6083135, essv5408380, essv6589250, essv6379776, essv5923126, essv5413929, essv6229428, essv5859180, essv5914149, essv5588458, essv6538915, essv6072207, essv5923600, essv6234568, essv6465046, essv6333743, essv6510990, essv6313714, essv6270433, essv5779127, essv6458593, essv5779464, essv6238808, essv6218791, essv5615043, essv6534458, essv5452313, essv5718934, essv5548570, essv6318208, essv5571075, essv6575858, essv6518875, essv5938002, essv6248977, essv6048786, essv5607798, essv6519587, essv5721154, essv5897229, essv6041143, essv5975887, essv6329366, essv5976696, essv6165132, essv6455271, essv6186200, essv5695580, essv5486160, essv6041000, essv6474359, essv5750920, essv6246967, essv5484455, essv6445445, essv5589849, essv6193510, essv5823901, essv5619094, essv5562702, essv5683115, essv5750413, essv5421215, essv5667547, essv6093312, essv6596489, essv6488330, essv5497094, essv6090089, essv6162283, essv5639985, essv5970967, essv5854918, essv6137357, essv6087387, essv5550862, essv5712135, essv5572157, essv5668832, essv6553961, essv5609412, essv6167762, essv5994067, essv6448708, essv6152278, essv5860244, essv6304373, essv5661366, essv6266709, essv6196990, essv6063853, essv6035826, essv5864044, essv5527658, essv5787695, essv6569758, essv6303885, essv5848980, essv5773848, essv5723031, essv6594972, essv6582631, essv6532945, essv5970147, essv5743959, essv5636321, essv5633076, essv5819447, essv6339676, essv6191745, essv6163317, essv6120006, essv5764162, essv6075585, essv6293163, essv5732559, essv5855297, essv6596566, essv6316828, essv6377136, essv6256318, essv6473777, essv6447209, essv6394250, essv6463900, essv5485133, essv5938998, essv5788757, essv6540218, essv6294820, essv6119720, essv5728362, essv5651783, essv6463093, essv5708390, essv5948111, essv6294009, essv6164987, essv5498383, essv5465682, essv6157924, essv6090009, essv6077661, essv5706602, essv6229195, essv5991037, essv5830352, essv6164057, essv6209547, essv6543534, essv6075664, essv6486280
SamplesNA19394, HG01060, HG00189, HG00650, HG00442, HG00592, HG00231, NA19397, NA18924, HG01462, NA19909, NA19664, HG01052, HG01079, NA19704, NA20752, NA20512, HG00640, NA19350, NA19092, HG01465, NA20294, NA19684, NA12058, HG00115, HG00449, HG00150, NA19443, NA12400, NA20356, NA19920, NA12155, NA19067, NA19068, NA19396, NA19379, HG01070, HG00589, HG00272, NA19319, NA19382, NA20798, NA19448, HG00173, NA18567, NA20317, HG01492, HG00634, NA18618, NA07347, NA20768, NA19313, NA19782, HG00185, NA18964, HG00243, NA19130, NA19079, NA19404, HG00281, NA12282, HG01067, NA19383, HG00335, NA06984, HG01170, NA18868, HG00262, NA19917, NA19372, NA19371, HG00534, NA19075, NA18617, NA19385, NA19471, NA18986, NA18990, NA19445, NA11831, NA12777, HG00149, NA19908, NA19247, NA19657, HG00266, HG00183, HG00282, NA18934, HG00245, NA12342, HG00428, NA19347, HG00732, HG01095, HG00701, NA20810, NA19391, NA19327, NA19455, HG00584, NA19081, HG00500, HG00551, HG00708, HG01047, HG00651, NA19449, HG00404, HG00531, NA20581, HG01197, HG01383, HG00140, NA18553, HG01497, NA19338, NA19009, HG00146, NA19756, NA19469, NA19318, NA19625, NA18634, HG01148, HG00124, HG00155, NA12716, HG00336, HG00265, NA19834, NA19321, NA19473, NA19072, NA18950, HG00375, NA19331, HG00278, NA19380, NA07051, NA20785, NA12046, HG01357, HG01375, NA19679, NA19470, NA19324, NA19311, HG00116, HG01108, NA20281, NA19360, NA18615, HG01489, HG01342, HG00269, NA19398, HG00707, HG00614, HG01491, NA19472, NA19779, HG00267, NA19713, NA20510, NA20289, HG00310, HG00186, NA19102, NA18873, NA19900, HG00595, NA07056, NA18989, NA19312, HG00628, HG00171, HG01112, HG00554, NA19429, NA18487, HG00553, HG00581, NA19676, HG01516
Known GenesUGT2A1, UGT2A2
MethodMerging
AnalysisNo reference, merging analysis
PlatformMerging
CommentsHigh quality site
Reference1000_Genomes_Consortium_Phase_1
Pubmed ID23128226
Accession Number(s)esv2658506
Frequency
Sample Size1151
Observed Gain0
Observed Loss185
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer