A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2641432



Internal ID8358304
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:46755646..46807786hg38UCSC Ensembl
Innerchr3:46797136..46849276hg19UCSC Ensembl
Innerchr3:46772140..46824280hg18UCSC Ensembl
Cytoband3p21.31
Allele length
AssemblyAllele length
hg3852141
hg1952141
hg1852141
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5363432
SamplesNA18507
Known Genes
MethodSequencing
AnalysisCopy number variations are detected using the SOLiD Human CNV Tool. Regions with poor mappability are filtered out from consideration and a log ratio of coverage is used to determine areas of increased copy number. A Hidden Markov Model converts increased coverage into discrete copy number states.
PlatformNot specified
CommentsoriginalFile=Yoruban_cnv.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2641432
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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