A curated catalogue of human genomic structural variation




Variant Details

Variant: esv26266



Internal ID11043499
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:2646665..3092022hg38UCSC Ensembl
Innerchr10:2688857..3134214hg19UCSC Ensembl
Innerchr10:2678857..3124214hg18UCSC Ensembl
Cytoband10p15.2
Allele length
AssemblyAllele length
hg38445358
hg19445358
hg18445358
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv16140, esv15548, esv16519, esv20385, esv16419, esv17455
SamplesNA19257, NA06985, NA18523, NA18858, NA18909, NA19147, NA18511
Known GenesPFKP
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv26266
Frequency
Sample Size40
Observed Gain2
Observed Loss5
Observed Complex0
Frequencyn/a


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