Variant DetailsVariant: esv25924 Internal ID | 11043157 | Landmark | | Location Information | | Cytoband | 2q24.3 | Allele length | Assembly | Allele length | hg38 | 2135 | hg19 | 2135 | hg18 | 2135 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv17246, esv21394 | Samples | NA18502, NA18861, NA19190, NA18916, NA15510, NA19257, NA18909, NA19108, NA19147, NA12749, NA19129, NA18511 | Known Genes | SCN3A | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv25924
| Frequency | Sample Size | 40 | Observed Gain | 0 | Observed Loss | 12 | Observed Complex | 0 | Frequency | n/a |
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