A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2589450



Internal ID8306322
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:88759690..88761195hg38UCSC Ensembl
Outerchr4:89680841..89682346hg19UCSC Ensembl
Outerchr4:89899864..89901369hg18UCSC Ensembl
Cytoband4q22.1
Allele length
AssemblyAllele length
hg381506
hg191506
hg181506
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5247829
SamplesNA18507
Known GenesFAM13A
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2589450
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer