A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2588767



Internal ID8652325
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:80260546..80262340hg38UCSC Ensembl
Outerchr5:79556365..79558159hg19UCSC Ensembl
Outerchr5:79592121..79593915hg18UCSC Ensembl
Cytoband5q14.1
Allele length
AssemblyAllele length
hg381795
hg191795
hg181795
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5243774
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2588767
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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