A curated catalogue of human genomic structural variation




Variant Details

Variant: esv25872



Internal ID11043105
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:28275808..28284440hg38UCSC Ensembl
Innerchr10:28564737..28573369hg19UCSC Ensembl
Innerchr10:28604743..28613375hg18UCSC Ensembl
Cytoband10p11.23
Allele length
AssemblyAllele length
hg388633
hg198633
hg188633
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv12765
SamplesNA19108
Known GenesMPP7
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv25872
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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