A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2577063



Internal ID8640621
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:114791431..114792801hg38UCSC Ensembl
Outerchr3:114510278..114511648hg19UCSC Ensembl
Outerchr3:115992968..115994338hg18UCSC Ensembl
Cytoband3q13.31
Allele length
AssemblyAllele length
hg381371
hg191371
hg181371
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5253060
SamplesNA18507
Known GenesZBTB20
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2577063
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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