A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2572403



Internal ID8635961
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:58727717..58730913hg38UCSC Ensembl
Innerchr1:59193389..59196585hg19UCSC Ensembl
Innerchr1:58965977..58969173hg18UCSC Ensembl
Cytoband1p32.1
Allele length
AssemblyAllele length
hg383197
hg193197
hg183197
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5264945
SamplesNA18507
Known Genes
MethodSequencing
AnalysisCopy number variations are detected using the SOLiD Human CNV Tool. Regions with poor mappability are filtered out from consideration and a log ratio of coverage is used to determine areas of increased copy number. A Hidden Markov Model converts increased coverage into discrete copy number states.
PlatformNot specified
CommentsoriginalFile=Yoruban_cnv.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2572403
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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