Variant DetailsVariant: esv25622![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr2:234312898..234324273;width=800;overview=1) Internal ID | 11042855 | Landmark | | Location Information | | Cytoband | 2q37.1 | Allele length | Assembly | Allele length | hg38 | 11376 | hg19 | 11376 | hg18 | 11376 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv16620 | Samples | NA18861, NA18523, NA18517 | Known Genes | DNAJB3, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9 | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv25622
| Frequency | Sample Size | 40 | Observed Gain | 0 | Observed Loss | 3 | Observed Complex | 0 | Frequency | n/a |
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