A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2557224



Internal ID8620782
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:74352413..74353947hg38UCSC Ensembl
Outerchr5:73648238..73649772hg19UCSC Ensembl
Outerchr5:73683994..73685528hg18UCSC Ensembl
Cytoband5q13.3
Allele length
AssemblyAllele length
hg381535
hg191535
hg181535
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5329194
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2557224
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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