A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2544823



Internal ID8608381
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:1702255..1704899hg38UCSC Ensembl
Outerchr2:1706027..1708671hg19UCSC Ensembl
Outerchr2:1685034..1687678hg18UCSC Ensembl
Cytoband2p25.3
Allele length
AssemblyAllele length
hg382645
hg192645
hg182645
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5204839
SamplesNA18507
Known GenesPXDN
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2544823
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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