A curated catalogue of human genomic structural variation




Variant Details

Variant: esv25270



Internal ID11042503
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:132303409..132305804hg38UCSC Ensembl
Innerchr12:132879995..132882390hg19UCSC Ensembl
Innerchr12:131390068..131392463hg18UCSC Ensembl
Cytoband12q24.33
Allele length
AssemblyAllele length
hg382396
hg192396
hg182396
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv10923
SamplesNA12489, NA18523, NA19114, NA18517, NA12776, NA19257, NA19147, NA12414, NA11995, NA12006, NA12239, NA18502, NA18858, NA12749, NA12156, NA19099, NA19225, NA19240
Known GenesGALNT9
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv25270
Frequency
Sample Size40
Observed Gain0
Observed Loss18
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer