A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2520814



Internal ID8237686
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:197924491..197925957hg38UCSC Ensembl
Outerchr1:197893621..197895087hg19UCSC Ensembl
Outerchr1:196160244..196161710hg18UCSC Ensembl
Cytoband1q31.3
Allele length
AssemblyAllele length
hg381467
hg191467
hg181467
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5184269
SamplesNA18507
Known GenesLHX9
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2520814
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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