A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2516589



Internal ID8233461
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr20:37186837..37188174hg38UCSC Ensembl
Outerchr20:35815240..35816577hg19UCSC Ensembl
Outerchr20:35248654..35249991hg18UCSC Ensembl
Cytoband20q11.23
Allele length
AssemblyAllele length
hg381338
hg191338
hg181338
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5316570
SamplesNA18507
Known GenesRPN2
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2516589
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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