A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2509925



Internal ID8226798
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:26977284..26979216hg38UCSC Ensembl
Outerchr12:27130217..27132149hg19UCSC Ensembl
Outerchr12:27021484..27023416hg18UCSC Ensembl
Cytoband12p11.23
Allele length
AssemblyAllele length
hg381933
hg191933
hg181933
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5262796
SamplesNA18507
Known GenesTM7SF3
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2509925
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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