A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2500079



Internal ID8216951
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:99621555..99623000hg38UCSC Ensembl
Outerchr15:100161760..100163205hg19UCSC Ensembl
Outerchr15:97979283..97980728hg18UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg381446
hg191446
hg181446
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5379812
SamplesNA18507
Known GenesMEF2A
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2500079
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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