A curated catalogue of human genomic structural variation




Variant Details

Variant: esv24866



Internal ID11042099
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:127270875..127272461hg38UCSC Ensembl
Innerchr9:130033154..130034740hg19UCSC Ensembl
Innerchr9:129072975..129074561hg18UCSC Ensembl
Cytoband9q33.3
Allele length
AssemblyAllele length
hg381587
hg191587
hg181587
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv15595
SamplesNA19147, NA18916, NA19190, NA18858, NA19240
Known GenesGARNL3
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv24866
Frequency
Sample Size40
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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