Variant Details

Variant: esv24852

Internal ID

11042085

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:27158052..27164589	hg38	UCSC Ensembl
Inner	chr15:27403199..27409736	hg19	UCSC Ensembl
Inner	chr15:24985945..24992482	hg18	UCSC Ensembl

Cytoband

15q12

Allele length

Assembly	Allele length
hg38	6538
hg19	6538
hg18	6538

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

esv18611

Samples

NA18502, NA11995, NA18861, NA18508, NA12414, NA11931, NA12004, NA19190, NA18916, NA12287, NA12156, NA12044, NA12828, NA11993, NA12489, NA12878, NA18907, NA07045, NA19114, NA11894, NA12239, NA15510, NA19099, NA19257, NA19225, NA06985, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA07037, NA12749, NA18505, NA19129, NA12006, NA12776

Known Genes

GABRG3

Method

Oligo aCGH

Analysis

Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.

Platform

Sanger H. Sapiens 42mCGH Array 5781_53 726K v1

Comments

Reference

Conrad_et_al_2009

Pubmed ID

19812545

Accession Number(s)

esv24852

Frequency

Sample Size	40
Observed Gain	39
Observed Loss	0
Observed Complex	0
Frequency	n/a